run("Colors...", "foreground=white background=black selection=yellow");
run("Options...", "iterations=1 count=1 black");

rawdir=getDirectory("User Choose Raw Data Folder");
resultdir=getDirectory("User Choose Result Data Folder");
list=getFileList(rawdir);
for(f=0;f<list.length;f++)
 {
  newname = substring(list[f], 0, indexOf( list[f], ".czi"));	
  run("Bio-Formats Importer", "open=["+rawdir+list[f]+"] color_mode=Default rois_import=[ROI manager] view=Hyperstack stack_order=XYCZT");
  saveAs("Tiff", resultdir+newname+".tif");
  close();
 }

print("Macro Finished");